RNA-seq workflow
Python and shell workflow files, QC reports, tabular outputs and a documentation portal.
Limit: Study-specific design, contribution, permissions and result interpretation need confirmation.
View repository ↗Source-backed project index
See the work.
Understand its limits.
These existing research repositories are starting points for a methods discussion. Project-specific contribution, data permissions and rerun status must be checked before treating them as validated examples. Client outcomes, endorsements, sample sizes and performance improvements are not asserted.
Microbiome analysis
QIIME artifacts, diversity and abundance outputs, and Python processing scripts.
Limit: Assay design, controls and inference require review; no client outcome claimed.
View repository ↗Environmental metabarcoding
R/Python analysis scripts, environment definition, tabular results and report source.
Limit: Dataset licensing, contribution and publication release remain to be confirmed.
View repository ↗De novo transcriptome evidence
Computational audit and candidate-evidence scripts with annotation outputs.
Limit: Computational evidence is not experimental biological validation; client release required.
View repository ↗Animal image classification
Notebook and spreadsheet inventory support a computational prototype.
Limit: Notebook execution, evaluation and image licensing not independently verified.
View repository ↗Research machine learning
Notebook, figures, spreadsheets and analysis archive.
Limit: Full code, leakage, validation splits and performance not verified.
View repository ↗Have a similar problem?
We’ll discuss a suitable scope and agree what success means for your project.
An illustrative analysis handover.
This is an example of folder structure, not a completed analysis or client result. Contents depend on the agreed scope.
project/ README — question, design and rerun instructions metadata/ — data dictionary and sample manifest qc/ — input checks and documented exclusions results/ — annotated tables and figure exports methods/ — assumptions, references and limitations workflow/ — scripts, configuration and software versions
A useful README explains input provenance, commands, expected outputs and any steps requiring external compute or licensed resources.
Discuss your required deliverables →